JS-044 MED: rewire bin/*.js consumers onto the new FILE bindings

Once JS-042 surfaces io.stat mtime + io.lstat/readlink/symlink/chmod, delete the bin/*.js workarounds: the /usr/bin/stat subprocess in classify.js, the symlink "assume clean" / throw-recovery hacks, and the unapplied symlinks + exec-bit in checkout.js. Realizes the bin/*.js review's #1 + #3 payoff (and the JS-038 checkout residuals). BLOCKED on JS-042 (bindings) + JS-043 (consolidated base). Method: Issues.

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