JS-041 MED: bin/lib/checkout.js + bin/get.js — apply tree + entry

Materialise a fetched baseline tree into the worktree (new/del/mod, files+dirs), append the wtlog/REFS rows, print the be get op-summary, and wire the bin/get.js entry + transport dispatch. The orchestration tying JS-039 fetch + JS-040 ingest into output-equivalent be get. Part of JS-038.

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